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  5. GRMZM2G021170

GRMZM2G021170


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG_42_0002556 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002556_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G021170
Cluster HCCA clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
At3g59980 No alias Nucleic acid-binding, OB-fold-like protein... 0.02 Orthogroups_2024-Update
Bradi1g55690 No alias Nucleic acid-binding, OB-fold-like protein 0.02 Orthogroups_2024-Update
Kfl00003_0540 kfl00003_0540_v1.1 (at3g59980 : 177.0) Nucleic acid-binding, OB-fold-like... 0.03 Orthogroups_2024-Update
Mp1g24710.1 No alias Probable methionine--tRNA ligase OS=Oryza sativa subsp.... 0.02 Orthogroups_2024-Update
Potri.017G000200 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
Pp1s129_152V6 No alias F24G16.250; tRNA-binding region domain-containing... 0.04 Orthogroups_2024-Update
Solyc08g015960 No alias Methionyl-tRNA synthetase, putative (AHRD V3.3 *** B9STA0_RICCO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005750 mitochondrial respiratory chain complex III IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0045275 respiratory chain complex III IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002547 tRNA-bd_dom 105 199
No external refs found!