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GRMZM2G021223


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0001097 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G021223
Cluster HCCA clusters: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G078300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
MA_10436130g0020 No alias (at5g52040 : 268.0) encodes an arginine/serine-rich... 0.03 Orthogroups_2024-Update
PSME_00051112-RA No alias (at3g61860 : 159.0) encodes an arginine/serine-rich... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 95 157
IPR000504 RRM_dom 4 61
No external refs found!