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  5. GRMZM2G026804

GRMZM2G026804


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0002108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G026804
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
At1g48100 No alias Polygalacturonase At1g48100... 0.04 Orthogroups_2024-Update
Bradi2g11380 No alias Pectin lyase-like superfamily protein 0.01 Orthogroups_2024-Update
Brara.F00451.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
Glyma.08G087900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G300900.1 No alias polygalacturonase *(PGX3-like) & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc01g100980 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G02460.1) 0.02 Orthogroups_2024-Update
Sopen01g044440 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update
Sopen04g003350 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006021 inositol biosynthetic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 126 454
No external refs found!