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  5. GRMZM2G026991

GRMZM2G026991


Description : U5 small nuclear ribonucleoprotein helicase, putative


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G026991
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
At3g27730 No alias DNA helicase ROCK-N-ROLLERS... 0.03 Orthogroups_2024-Update
Bradi3g00980 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.02 Orthogroups_2024-Update
Glyma.06G202500 No alias U5 small nuclear ribonucleoprotein helicase 0.03 Orthogroups_2024-Update
Solyc06g082100 No alias U5 small nuclear ribonucleoprotein helicase (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen06g033490 No alias Sec63 Brl domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1875 2193
IPR001650 Helicase_C 756 900
IPR011545 DEAD/DEAH_box_helicase_dom 1390 1559
IPR011545 DEAD/DEAH_box_helicase_dom 527 701
IPR004179 Sec63-dom 1043 1343
No external refs found!