Description : glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Zea release: GRMZM2G027782 | |
Cluster | HCCA clusters: Cluster_33 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At3g07840 | No alias | Pectin lyase-like superfamily protein... | 0.02 | Orthogroups_2024-Update | |
At4g13760 | No alias | Pectin lyase-like superfamily protein... | 0.02 | Orthogroups_2024-Update | |
At5g48140 | No alias | At5g48140 [Source:UniProtKB/TrEMBL;Acc:Q9LUB8] | 0.03 | Orthogroups_2024-Update | |
Glyma.04G157600 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os02g10300 | No alias | polygalacturonase, putative, expressed | 0.02 | Orthogroups_2024-Update | |
Potri.007G035800 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.4G218200.1 | No alias | EC_3.2 glycosylase | 0.04 | Orthogroups_2024-Update | |
Seita.4G218300.1 | No alias | EC_3.2 glycosylase | 0.04 | Orthogroups_2024-Update | |
Seita.5G182200.1 | No alias | EC_3.2 glycosylase | 0.04 | Orthogroups_2024-Update | |
Seita.9G141800.1 | No alias | EC_3.2 glycosylase | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004650 | polygalacturonase activity | IEA | InterProScan predictions |
BP | GO:0005975 | carbohydrate metabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0010215 | cellulose microfibril organization | IEP | Predicted GO |
BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
BP | GO:0016049 | cell growth | IEP | Predicted GO |
MF | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides | IEP | Predicted GO |
BP | GO:0030198 | extracellular matrix organization | IEP | Predicted GO |
MF | GO:0030570 | pectate lyase activity | IEP | Predicted GO |
MF | GO:0030599 | pectinesterase activity | IEP | Predicted GO |
CC | GO:0031225 | anchored component of membrane | IEP | Predicted GO |
BP | GO:0032958 | inositol phosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0040007 | growth | IEP | Predicted GO |
BP | GO:0042545 | cell wall modification | IEP | Predicted GO |
BP | GO:0043062 | extracellular structure organization | IEP | Predicted GO |
BP | GO:0043647 | inositol phosphate metabolic process | IEP | Predicted GO |
BP | GO:0045229 | external encapsulating structure organization | IEP | Predicted GO |
BP | GO:0046165 | alcohol biosynthetic process | IEP | Predicted GO |
BP | GO:0046173 | polyol biosynthetic process | IEP | Predicted GO |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Predicted GO |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | Predicted GO |
BP | GO:0071555 | cell wall organization | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000743 | Glyco_hydro_28 | 75 | 402 |
No external refs found! |