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  5. GRMZM2G029258

GRMZM2G029258


Description : ATP-dependent RNA helicase, putative


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G029258
Cluster HCCA clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Bradi1g61220 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Bradi3g13460 No alias ATP-dependent RNA helicase, putative 0.02 Orthogroups_2024-Update
Bradi3g59870 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Bradi4g16730 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi4g19990 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Brara.B00468.1 No alias RNA helicase *(Prp16) 0.03 Orthogroups_2024-Update
Cre08.g358563 No alias ATP-dependent RNA helicase, putative 0.02 Orthogroups_2024-Update
MA_629782g0010 No alias (at5g13010 : 617.0) embryo defective 3011 (EMB3011);... 0.02 Orthogroups_2024-Update
Mp4g16380.1 No alias RNA helicase (Prp2) 0.02 Orthogroups_2024-Update
Potri.010G057200 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Potri.010G172500 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Potri.015G008700 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Pp1s312_57V6 No alias deah-box rna helicase 0.02 Orthogroups_2024-Update
Pp1s38_83V6 No alias atp-dependent rna 0.03 Orthogroups_2024-Update
Seita.9G426000.1 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Orthogroups_2024-Update
evm.model.contig_2494.11 No alias (at3g62310 : 436.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
evm.model.tig00021589.29 No alias (at3g26560 : 868.0) ATP-dependent RNA helicase,... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP Predicted GO
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0006481 C-terminal protein methylation IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006570 tyrosine metabolic process IEP Predicted GO
BP GO:0006571 tyrosine biosynthetic process IEP Predicted GO
BP GO:0006783 heme biosynthetic process IEP Predicted GO
BP GO:0006784 heme a biosynthetic process IEP Predicted GO
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0018410 C-terminal protein amino acid modification IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0043687 post-translational protein modification IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046160 heme a metabolic process IEP Predicted GO
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 781 913
IPR011709 DUF1605 1121 1196
IPR007502 Helicase-assoc_dom 975 1063
IPR003029 S1_domain 280 349
IPR011545 DEAD/DEAH_box_helicase_dom 589 739
No external refs found!