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Description : CCAAT-binding factor
Gene families : OG_42_0006909 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006909_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM2G031326 | |
| Cluster | HCCA clusters: Cluster_73 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At2g17250 | No alias | CCAAT-binding factor [Source:UniProtKB/TrEMBL;Acc:F4IMH3] | 0.03 | Orthogroups_2024-Update | |
| Bradi5g19570 | No alias | CCAAT-binding factor | 0.03 | Orthogroups_2024-Update | |
| Cre01.g068377 | No alias | CCAAT-binding factor | 0.02 | Orthogroups_2024-Update | |
| Kfl00054_0200 | kfl00054_0200_v1.1 | (at2g17250 : 319.0) EMBRYO DEFECTIVE 2762 (EMB2762);... | 0.01 | Orthogroups_2024-Update | |
| Seita.7G214100.1 | No alias | SSU processome assembly factor *(NOC4) | 0.05 | Orthogroups_2024-Update | |
| Sobic.006G193300.1 | No alias | SSU processome assembly factor *(NOC4) | 0.06 | Orthogroups_2024-Update | |
| Solyc10g074560 | No alias | Nucleolar complex 4 (AHRD V3.3 *** A0A0B0NPG2_GOSAR) | 0.04 | Orthogroups_2024-Update | |
| evm.model.tig00000553.49 | No alias | (at2g17250 : 103.0) EMBRYO DEFECTIVE 2762 (EMB2762);... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004525 | ribonuclease III activity | IEP | Predicted GO |
| MF | GO:0004751 | ribose-5-phosphate isomerase activity | IEP | Predicted GO |
| CC | GO:0005730 | nucleolus | IEP | Predicted GO |
| BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
| MF | GO:0008375 | acetylglucosaminyltransferase activity | IEP | Predicted GO |
| BP | GO:0009052 | pentose-phosphate shunt, non-oxidative branch | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
| MF | GO:0017150 | tRNA dihydrouridine synthase activity | IEP | Predicted GO |
| BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0030259 | lipid glycosylation | IEP | Predicted GO |
| MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005612 | CCAAT-binding_factor | 332 | 492 |
| No external refs found! |