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  5. GRMZM2G035017

GRMZM2G035017


Description : Ribosomal protein S4 (RPS4A) family protein


Gene families : OG_42_0001598 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G035017
Cluster HCCA clusters: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
A4A49_10798 No alias 40s ribosomal protein s4 0.03 Orthogroups_2024-Update
At5g58420 No alias 40S ribosomal protein S4-3... 0.04 Orthogroups_2024-Update
Bradi2g35620 No alias Ribosomal protein S4 (RPS4A) family protein 0.04 Orthogroups_2024-Update
Brara.B00233.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.C00278.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.C01137.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.J01227.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.J02486.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Glyma.01G124300 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
Glyma.02G263200 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Orthogroups_2024-Update
Glyma.03G050300 No alias Ribosomal protein S4 (RPS4A) family protein 0.06 Orthogroups_2024-Update
Glyma.14G056900 No alias Ribosomal protein S4 (RPS4A) family protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G021720.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Kfl00456_0140 kfl00456_0140_v1.1 (p46299|rs4_goshi : 404.0) 40S ribosomal protein S4 -... 0.04 Orthogroups_2024-Update
Mp8g03280.1 No alias component RPS4 of SSU proteome 0.02 Orthogroups_2024-Update
Potri.013G011000 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
Pp1s38_194V6 No alias 40s ribosomal s4 protein 0.03 Orthogroups_2024-Update
Pp1s39_422V6 No alias 40s ribosomal s4 protein 0.04 Orthogroups_2024-Update
Seita.3G036600.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Seita.3G268400.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.001G018900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.003G160900.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.009G115700.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Solyc02g070320 No alias No description available 0.04 Orthogroups_2024-Update
Solyc02g070330 No alias 40S ribosomal protein S4 (AHRD V3.3 *-* RS4_SOLTU) 0.03 Orthogroups_2024-Update
Solyc02g070340 No alias 40S ribosomal protein S4 (AHRD V3.3 *** RS4_SOLTU) 0.02 Orthogroups_2024-Update
Solyc02g070350 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g070360 No alias No description available 0.05 Orthogroups_2024-Update
Sopen02g019410 No alias Ribosomal family S4e 0.04 Orthogroups_2024-Update
Sopen02g019420 No alias Ribosomal family S4e 0.06 Orthogroups_2024-Update
Sopen02g019430 No alias Ribosomal family S4e 0.06 Orthogroups_2024-Update
Sopen02g019440 No alias Ribosomal family S4e 0.04 Orthogroups_2024-Update
Sopen02g019450 No alias Ribosomal family S4e 0.04 Orthogroups_2024-Update
evm.model.contig_832.1 No alias (p46299|rs4_goshi : 352.0) 40S ribosomal protein S4 -... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004834 tryptophan synthase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005534 galactose binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR013845 Ribosomal_S4e_central_region 95 169
IPR032277 40S_S4_C 212 256
IPR002942 S4_RNA-bd 50 90
IPR013843 Ribosomal_S4e_N 3 39
IPR005824 KOW 177 211
No external refs found!