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  5. GRMZM2G035417

GRMZM2G035417


Description : Rad23 UV excision repair protein family


Gene families : OG_42_0001189 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G035417
Cluster HCCA clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
A4A49_24565 No alias ubiquitin receptor rad23d 0.02 Orthogroups_2024-Update
At5g38470 No alias Ubiquitin receptor RAD23d... 0.03 Orthogroups_2024-Update
Bradi3g05920 No alias Rad23 UV excision repair protein family 0.02 Orthogroups_2024-Update
Brara.D00902.1 No alias ubiquitin-proteasome shuttle factor *(RAD23) 0.03 Orthogroups_2024-Update
HORVU5Hr1G060920.5 No alias ubiquitin-proteasome shuttle factor *(RAD23) 0.02 Orthogroups_2024-Update
LOC_Os06g15360 No alias RAD23 DNA repair protein, putative, expressed 0.03 Orthogroups_2024-Update
Seita.2G201100.1 No alias ubiquitin-proteasome shuttle factor *(RAD23) 0.03 Orthogroups_2024-Update
Seita.4G116800.1 No alias ubiquitin-proteasome shuttle factor *(RAD23) 0.03 Orthogroups_2024-Update
Sopen02g030530 No alias UBA/TS-N domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006289 nucleotide-excision repair IEA InterProScan predictions
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Predicted GO
CC GO:0000139 Golgi membrane IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003714 transcription corepressor activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0007033 vacuole organization IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1905037 autophagosome organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 76
IPR015360 XPC-bd 276 331
IPR015940 UBA 358 393
IPR015940 UBA 160 198
No external refs found!