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  5. GRMZM2G039746

GRMZM2G039746


Description : RNA binding;RNA binding


Gene families : OG_42_0002877 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G039746
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
At3g11964 No alias rRNA biogenesis protein RRP5... 0.02 Orthogroups_2024-Update
Bradi1g38227 No alias RNA binding;RNA binding 0.05 Orthogroups_2024-Update
Brara.A03376.1 No alias SSU processome assembly factor *(RRP5) 0.03 Orthogroups_2024-Update
Cre10.g428750 No alias RNA binding;RNA binding 0.03 Orthogroups_2024-Update
Glyma.02G168900 No alias RNA binding;RNA binding 0.03 Orthogroups_2024-Update
Glyma.09G104000 No alias RNA binding;RNA binding 0.04 Orthogroups_2024-Update
HORVU1Hr1G014010.25 No alias SSU processome assembly factor *(RRP5) 0.03 Orthogroups_2024-Update
Potri.016G062600 No alias RNA binding;RNA binding 0.05 Orthogroups_2024-Update
Seita.2G077000.1 No alias SSU processome assembly factor *(RRP5) 0.04 Orthogroups_2024-Update
Sobic.002G071400.1 No alias SSU processome assembly factor *(RRP5) 0.05 Orthogroups_2024-Update
Sopen03g011350 No alias S1 RNA binding domain 0.03 Orthogroups_2024-Update
evm.model.contig_2143.1 No alias (at3g11964 : 182.0) RNA binding;RNA binding; FUNCTIONS... 0.05 Orthogroups_2024-Update
evm.model.tig00000605.10 No alias (at3g11964 : 197.0) RNA binding;RNA binding; FUNCTIONS... 0.03 Orthogroups_2024-Update
evm.model.tig00000605.11 No alias (at3g11964 : 172.0) RNA binding;RNA binding; FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006397 mRNA processing IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR008847 Suf 269 368
No external refs found!