1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. GRMZM2G040995

GRMZM2G040995


Description : RNA helicase, ATP-dependent, SK12/DOB1 protein


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G040995
Cluster HCCA clusters: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
A4A49_16214 No alias dexh-box atp-dependent rna helicase dexh9 0.03 Orthogroups_2024-Update
Bradi1g52230 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
Cre02.g117900 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Cre06.g289950 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G025670.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.02 Orthogroups_2024-Update
Kfl00264_0180 kfl00264_0180_v1.1 (at1g59760 : 1027.0) RNA helicase, ATP-dependent,... 0.02 Orthogroups_2024-Update
Sopen05g027830 No alias rRNA-processing arch domain 0.03 Orthogroups_2024-Update
evm.model.tig00020723.108 No alias (at1g59760 : 938.0) RNA helicase, ATP-dependent,... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 535 802
IPR001650 Helicase_C 376 481
IPR012961 Ski2_C 830 999
IPR011545 DEAD/DEAH_box_helicase_dom 85 232
No external refs found!