1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. GRMZM2G042061

GRMZM2G042061


Description : Ribosomal L28 family


Gene families : OG_42_0007957 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007957_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G042061
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
A4A49_16586 No alias 50s ribosomal protein l28, chloroplastic 0.04 Orthogroups_2024-Update
Bradi2g40040 No alias Ribosomal L28 family 0.03 Orthogroups_2024-Update
Brara.D02034.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Cre06.g265800 No alias Ribosomal L28 family 0.07 Orthogroups_2024-Update
Glyma.10G002600 No alias Ribosomal L28 family 0.03 Orthogroups_2024-Update
Kfl00690_0100 kfl00690_0100_v1.1 (p30956|rk28_tobac : 93.6) 50S ribosomal protein L28,... 0.03 Orthogroups_2024-Update
MA_10426581g0010 No alias (at2g33450 : 140.0) Ribosomal L28 family; FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
Potri.010G068500 No alias Ribosomal L28 family 0.07 Orthogroups_2024-Update
Pp1s229_21V6 No alias ribosomal protein l28 0.05 Orthogroups_2024-Update
Seita.9G244200.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Sobic.001G240000.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Solyc09g090410 No alias 50S ribosomal protein L28, chloroplastic (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen09g033320 No alias Ribosomal L28 family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004817 cysteine-tRNA ligase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 66 124
No external refs found!