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  5. At1g16480

At1g16480


Description : Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I4G1]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g16480
Cluster HCCA clusters: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
74842 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
A4A49_21718 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At1g03540 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 Orthogroups_2024-Update
At3g63370 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Orthogroups_2024-Update
Bradi2g22840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g44712 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g27691 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.F00971.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.H01750.1 No alias RNA editing factor *(SLO4) 0.04 Orthogroups_2024-Update
Glyma.04G203500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G090900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G066140.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00006107-RA No alias (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00029429-RA No alias (at3g13770 : 552.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Pp1s183_52V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Seita.9G001600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.05 Orthogroups_2024-Update
Sobic.003G277100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G066900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G179000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.02 Orthogroups_2024-Update
Solyc09g090220 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen01g054250 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 199 224
IPR002885 Pentatricopeptide_repeat 24 54
IPR002885 Pentatricopeptide_repeat 126 156
IPR002885 Pentatricopeptide_repeat 531 561
IPR002885 Pentatricopeptide_repeat 227 254
IPR002885 Pentatricopeptide_repeat 298 325
IPR002885 Pentatricopeptide_repeat 328 357
IPR002885 Pentatricopeptide_repeat 503 527
IPR032867 DYW_dom 804 927
IPR002885 Pentatricopeptide_repeat 427 473
IPR002885 Pentatricopeptide_repeat 633 677
No external refs found!