Description : Ribosomal L29 family protein
Gene families : OG_42_0001364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001364_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Zea release: GRMZM2G043279 | |
Cluster | HCCA clusters: Cluster_35 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
438324 | No alias | Ribosomal L29 family protein | 0.08 | Orthogroups_2024-Update | |
A4A49_28237 | No alias | 60s ribosomal protein l35-4 | 0.07 | Orthogroups_2024-Update | |
A4A49_63512 | No alias | 60s ribosomal protein l35-4 | 0.05 | Orthogroups_2024-Update | |
At2g39390 | No alias | 60S ribosomal protein L35-2... | 0.04 | Orthogroups_2024-Update | |
Bradi3g43840 | No alias | Ribosomal L29 family protein | 0.04 | Orthogroups_2024-Update | |
Bradi5g07170 | No alias | Ribosomal L29 family protein | 0.05 | Orthogroups_2024-Update | |
Brara.A03526.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
Brara.C02014.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Brara.C03268.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
Brara.E03085.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
Cre14.g617900 | No alias | Ribosomal L29 family protein | 0.05 | Orthogroups_2024-Update | |
Glyma.10G291500 | No alias | Ribosomal L29 family protein | 0.07 | Orthogroups_2024-Update | |
Glyma.20G240700 | No alias | Ribosomal L29 family protein | 0.07 | Orthogroups_2024-Update | |
HORVU2Hr1G068120.2 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Kfl00608_0050 | kfl00608_0050_v1.1 | (at5g02610 : 177.0) Ribosomal L29 family protein ;... | 0.03 | Orthogroups_2024-Update | |
MA_10429159g0020 | No alias | (at5g02610 : 210.0) Ribosomal L29 family protein ;... | 0.07 | Orthogroups_2024-Update | |
Mp6g05620.1 | No alias | component RPL35 of LSU proteome component | 0.05 | Orthogroups_2024-Update | |
PSME_00020825-RA | No alias | (at5g02610 : 157.0) Ribosomal L29 family protein ;... | 0.07 | Orthogroups_2024-Update | |
Potri.008G048800 | No alias | Ribosomal L29 family protein | 0.05 | Orthogroups_2024-Update | |
Potri.010G212300 | No alias | Ribosomal L29 family protein | 0.05 | Orthogroups_2024-Update | |
Pp1s102_67V6 | No alias | 60s ribosomal protein l35 | 0.07 | Orthogroups_2024-Update | |
Pp1s133_93V6 | No alias | 60s ribosomal protein l35 | 0.1 | Orthogroups_2024-Update | |
Pp1s1_489V6 | No alias | 60s ribosomal protein l35 | 0.09 | Orthogroups_2024-Update | |
Seita.1G166300.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Seita.7G064700.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
Sobic.004G152400.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
Sobic.004G152700.1 | No alias | component *(uL29) of large ribosomal-subunit (LSU) proteome | 0.11 | Orthogroups_2024-Update | |
Solyc04g010240 | No alias | 60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES) | 0.08 | Orthogroups_2024-Update | |
Solyc05g054810 | No alias | 60S ribosomal protein L35 (AHRD V3.3 *** RL35_EUPES) | 0.07 | Orthogroups_2024-Update | |
Sopen04g005430 | No alias | Ribosomal L29 protein | 0.04 | Orthogroups_2024-Update | |
Sopen05g033280 | No alias | Ribosomal L29 protein | 0.04 | Orthogroups_2024-Update | |
evm.model.contig_654.2 | No alias | (at5g02610 : 134.0) Ribosomal L29 family protein ;... | 0.1 | Orthogroups_2024-Update | |
evm.model.tig00000241.79 | No alias | (at3g55170 : 158.0) Ribosomal L29 family protein ;... | 0.06 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000786 | nucleosome | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003849 | 3-deoxy-7-phosphoheptulonate synthase activity | IEP | Predicted GO |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0004109 | coproporphyrinogen oxidase activity | IEP | Predicted GO |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Predicted GO |
CC | GO:0005743 | mitochondrial inner membrane | IEP | Predicted GO |
BP | GO:0006839 | mitochondrial transport | IEP | Predicted GO |
BP | GO:0006848 | pyruvate transport | IEP | Predicted GO |
BP | GO:0006850 | mitochondrial pyruvate transmembrane transport | IEP | Predicted GO |
BP | GO:0015718 | monocarboxylic acid transport | IEP | Predicted GO |
MF | GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
CC | GO:0019866 | organelle inner membrane | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
MF | GO:0030515 | snoRNA binding | IEP | Predicted GO |
CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
CC | GO:0031090 | organelle membrane | IEP | Predicted GO |
CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044427 | chromosomal part | IEP | Predicted GO |
CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
CC | GO:0070469 | respiratory chain | IEP | Predicted GO |
BP | GO:0098656 | anion transmembrane transport | IEP | Predicted GO |
BP | GO:1901475 | pyruvate transmembrane transport | IEP | Predicted GO |
BP | GO:1903825 | organic acid transmembrane transport | IEP | Predicted GO |
BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | Predicted GO |
BP | GO:1990542 | mitochondrial transmembrane transport | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001854 | Ribosomal_L29/L35 | 8 | 64 |
No external refs found! |