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GRMZM2G047727


Description : Ubiquitin supergroup;Ribosomal protein L40e


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G047727
Cluster HCCA clusters: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Glyma.20G141600 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
HORVU4Hr1G061900.2 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Kfl00037_0290 kfl00037_0290_v1.1 (at4g05320 : 880.0) One of five polyubiquitin genes in... 0.02 Orthogroups_2024-Update
MA_20231g0010 No alias (at5g03240 : 528.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
Sobic.004G050100.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Sopen12g033690 No alias Ubiquitin family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR001975 Ribosomal_L40e 78 127
No external refs found!