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  5. GRMZM2G049329

GRMZM2G049329


Description : poly(A) polymerase 2


Gene families : OG_42_0001415 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G049329
Cluster HCCA clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Bradi3g08637 No alias nuclear poly(a) polymerase 0.02 Orthogroups_2024-Update
Glyma.04G086800 No alias nuclear poly(a) polymerase 0.03 Orthogroups_2024-Update
Potri.015G043200 No alias poly(A) polymerase 1 0.03 Orthogroups_2024-Update
Sobic.004G099800.1 No alias poly(A) RNA polymerase 0.03 Orthogroups_2024-Update
Sopen05g004470 No alias Poly(A) polymerase central domain 0.02 Orthogroups_2024-Update
evm.model.contig_746.1 No alias (at1g17980 : 224.0) Encodes a poly(A) polymerase.... 0.01 Orthogroups_2024-Update
evm.model.tig00000037.23 No alias (at1g17980 : 181.0) Encodes a poly(A) polymerase.... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0004652 polynucleotide adenylyltransferase activity IEA InterProScan predictions
MF GO:0016779 nucleotidyltransferase activity IEA InterProScan predictions
BP GO:0043631 RNA polyadenylation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004363 glutathione synthase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 427 499
IPR007010 PolA_pol_RNA-bd_dom 368 425
IPR002934 Polymerase_NTP_transf_dom 94 166
IPR007012 PolA_pol_cen_dom 21 365
No external refs found!