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GRMZM2G049866


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0002471 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G049866
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
MA_158497g0010 No alias (at3g56860 : 207.0) encodes a nuclear protein that binds... 0.02 Orthogroups_2024-Update
Seita.5G225200.1 No alias regulatory protein *(UBA1/2) of UBP1 activity 0.03 Orthogroups_2024-Update
Solyc02g021560 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc12g014210 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen02g006100 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 178 235
IPR000504 RRM_dom 77 143
No external refs found!