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At1g17630


Description : Putative pentatricopeptide repeat-containing protein At1g17630 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNP2]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g17630
Cluster HCCA clusters: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
105197 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
52147 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
At1g06140 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.05 Orthogroups_2024-Update
Bradi1g47170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g43210 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g22520 No alias mitochondrial editing factor 22 0.04 Orthogroups_2024-Update
Brara.A01167.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Brara.A03178.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.04G078800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
HORVU3Hr1G061610.1 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os01g60430 No alias pentatricopeptide repeat-containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g43430 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
Seita.8G163400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G213100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 400 426
IPR002885 Pentatricopeptide_repeat 540 563
IPR002885 Pentatricopeptide_repeat 126 154
IPR002885 Pentatricopeptide_repeat 333 360
IPR002885 Pentatricopeptide_repeat 362 390
IPR002885 Pentatricopeptide_repeat 501 531
IPR002885 Pentatricopeptide_repeat 473 498
IPR002885 Pentatricopeptide_repeat 223 268
No external refs found!