1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. GRMZM2G050218

GRMZM2G050218


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G050218
Cluster HCCA clusters: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
A4A49_05017 No alias heterogeneous nuclear ribonucleoprotein 1 0.03 Orthogroups_2024-Update
GRMZM2G014400 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Kfl00222_0020 kfl00222_0020_v1.1 (at1g17640 : 196.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
MA_125759g0010 No alias (at3g13224 : 273.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
MA_141102g0010 No alias (at3g13224 : 259.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
MA_68291g0010 No alias (at3g13224 : 261.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
Potri.002G115000 No alias RNA-binding protein 1 0.03 Orthogroups_2024-Update
Potri.003G040900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Solyc04g014820 No alias RNA-binding protein, putative (AHRD V3.3 *** Q1ENZ5_MUSAC) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 27 94
IPR000504 RRM_dom 117 175
No external refs found!