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GRMZM2G050501


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_42_0004261 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004261_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G050501
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
175982 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g22300 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Kfl00456_0130 kfl00456_0130_v1.1 (at5g15550 : 334.0) Transducin/WD40 repeat-like... 0.04 Orthogroups_2024-Update
Potri.017G093300 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s294_14V6 No alias T20K14.160; transducin / WD-40 repeat protein family... 0.02 Orthogroups_2024-Update
Seita.2G380200.1 No alias component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.05 Orthogroups_2024-Update
Sobic.002G365900.1 No alias component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.09 Orthogroups_2024-Update
Sopen01g053090 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
Sopen02g033500 No alias WD domain, G-beta repeat 0.05 Orthogroups_2024-Update
evm.model.tig00021428.5 No alias (at5g15550 : 166.0) Transducin/WD40 repeat-like... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012972 NLE 9 76
IPR001680 WD40_repeat 139 180
IPR001680 WD40_repeat 351 388
IPR001680 WD40_repeat 198 231
IPR001680 WD40_repeat 266 300
No external refs found!