GRMZM2G053196


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0005523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005523_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G053196
Cluster HCCA clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Bradi1g46560 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G013700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Pp1s218_117V6 No alias No description available 0.02 Orthogroups_2024-Update
Pp1s26_38V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.4G038900.1 No alias plastidial splicing factor *(EMB1270) 0.05 Orthogroups_2024-Update
Sobic.010G074100.1 No alias plastidial splicing factor *(EMB1270) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 364 394
IPR002885 Pentatricopeptide_repeat 1098 1126
IPR002885 Pentatricopeptide_repeat 782 808
IPR002885 Pentatricopeptide_repeat 712 741
IPR002885 Pentatricopeptide_repeat 837 894
IPR002885 Pentatricopeptide_repeat 280 339
IPR002885 Pentatricopeptide_repeat 454 513
IPR002885 Pentatricopeptide_repeat 1022 1071
IPR002885 Pentatricopeptide_repeat 396 444
IPR002885 Pentatricopeptide_repeat 221 265
IPR002885 Pentatricopeptide_repeat 957 999
No external refs found!