Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0005523 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005523_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Zea release: GRMZM2G053196 | |
Cluster | HCCA clusters: Cluster_90 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi1g46560 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.11G013700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Pp1s218_117V6 | No alias | No description available | 0.02 | Orthogroups_2024-Update | |
Pp1s26_38V6 | No alias | No description available | 0.02 | Orthogroups_2024-Update | |
Seita.4G038900.1 | No alias | plastidial splicing factor *(EMB1270) | 0.05 | Orthogroups_2024-Update | |
Sobic.010G074100.1 | No alias | plastidial splicing factor *(EMB1270) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0004751 | ribose-5-phosphate isomerase activity | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
BP | GO:0009052 | pentose-phosphate shunt, non-oxidative branch | IEP | Predicted GO |
BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Predicted GO |
BP | GO:0030259 | lipid glycosylation | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 364 | 394 |
IPR002885 | Pentatricopeptide_repeat | 1098 | 1126 |
IPR002885 | Pentatricopeptide_repeat | 782 | 808 |
IPR002885 | Pentatricopeptide_repeat | 712 | 741 |
IPR002885 | Pentatricopeptide_repeat | 837 | 894 |
IPR002885 | Pentatricopeptide_repeat | 280 | 339 |
IPR002885 | Pentatricopeptide_repeat | 454 | 513 |
IPR002885 | Pentatricopeptide_repeat | 1022 | 1071 |
IPR002885 | Pentatricopeptide_repeat | 396 | 444 |
IPR002885 | Pentatricopeptide_repeat | 221 | 265 |
IPR002885 | Pentatricopeptide_repeat | 957 | 999 |
No external refs found! |