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GRMZM2G053384


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0009389 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009389_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G053384
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Seita.8G163100.1 No alias RNA editing factor *(MEF11) 0.04 Orthogroups_2024-Update
Sobic.003G420000.1 No alias RNA editing factor *(MEF11) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 562 686
IPR002885 Pentatricopeptide_repeat 163 187
IPR002885 Pentatricopeptide_repeat 390 416
IPR002885 Pentatricopeptide_repeat 289 311
IPR002885 Pentatricopeptide_repeat 430 453
IPR002885 Pentatricopeptide_repeat 85 115
IPR002885 Pentatricopeptide_repeat 535 558
IPR002885 Pentatricopeptide_repeat 362 388
No external refs found!