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  5. GRMZM2G054225

GRMZM2G054225


Description : nuclear RNA polymerase D2A


Gene families : OG_42_0000798 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000798_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G054225
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Sopen10g029490 No alias RNA polymerase Rpb2, domain 6 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
BP GO:0006351 transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007645 RNA_pol_Rpb2_3 529 590
IPR007641 RNA_pol_Rpb2_7 1128 1226
IPR007120 DNA-dir_RNAP_su2_dom 756 1126
IPR007644 RNA_pol_bsu_protrusion 103 500
IPR007642 RNA_pol_Rpb2_2 320 452
IPR007647 RNA_pol_Rpb2_5 701 747
IPR007646 RNA_pol_Rpb2_4 625 686
No external refs found!