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GRMZM2G054896


Description : plastid-specific 50S ribosomal protein 6


Gene families : OG_42_0009107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G054896
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi4g16480 No alias plastid-specific 50S ribosomal protein 6 0.02 Orthogroups_2024-Update
Glyma.06G089700 No alias plastid-specific 50S ribosomal protein 6 0.02 Orthogroups_2024-Update
Kfl00714_0010 kfl00714_0010_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Seita.8G148900.1 No alias component *(cL38) of large plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Sopen04g030750 No alias hypothetical protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
CC GO:0009507 chloroplast IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR020526 Ribosomal_L6_chp 39 97
No external refs found!