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  5. GRMZM2G058252

GRMZM2G058252


Description : small nuclear ribonucleoprotein F


Gene families : OG_42_0004642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004642_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G058252
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
At4g30220 No alias Small nuclear ribonucleoprotein F... 0.03 Orthogroups_2024-Update
Bradi1g31330 No alias small nuclear ribonucleoprotein F 0.02 Orthogroups_2024-Update
Glyma.17G063100 No alias small nuclear ribonucleoprotein F 0.03 Orthogroups_2024-Update
HORVU7Hr1G111120.9 No alias component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.02 Orthogroups_2024-Update
PSME_00044685-RA No alias (at4g30220 : 156.0) small nuclear ribonucleoprotein F... 0.03 Orthogroups_2024-Update
Potri.018G092200 No alias small nuclear ribonucleoprotein F 0.02 Orthogroups_2024-Update
Seita.1G065900.1 No alias component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.04 Orthogroups_2024-Update
Seita.1G067900.1 No alias component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... 0.04 Orthogroups_2024-Update
Solyc10g081370 No alias small nuclear ribonucleoprotein F (AHRD V3.3 *** AT4G30220.1) 0.03 Orthogroups_2024-Update
evm.model.tig00000944.19 No alias (at4g30220 : 128.0) small nuclear ribonucleoprotein F... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Predicted GO
MF GO:0004418 hydroxymethylbilane synthase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046834 lipid phosphorylation IEP Predicted GO
BP GO:0046854 phosphatidylinositol phosphorylation IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 32 94
No external refs found!