At1g19850


Description : Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g19850
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Bradi3g28950 No alias auxin response factor 16 0.03 Orthogroups_2024-Update
Bradi3g40437 No alias Transcriptional factor B3 family protein /... 0.03 Orthogroups_2024-Update
Bradi3g45880 No alias auxin response factor 1 0.03 Orthogroups_2024-Update
Bradi4g07470 No alias auxin response factor 2 0.02 Orthogroups_2024-Update
Bradi5g25767 No alias auxin response factor 6 0.03 Orthogroups_2024-Update
Brara.D00084.1 No alias ARF-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G034840 No alias Transcriptional factor B3 family protein /... 0.04 Orthogroups_2024-Update
Glyma.02G281700 No alias auxin response factor 6 0.03 Orthogroups_2024-Update
Glyma.07G130400 No alias Transcriptional factor B3 family protein /... 0.03 Orthogroups_2024-Update
Glyma.12G076200 No alias auxin response factor 10 0.04 Orthogroups_2024-Update
Glyma.15G091000 No alias auxin response factor 8 0.04 Orthogroups_2024-Update
Glyma.19G181900 No alias auxin response factor 16 0.03 Orthogroups_2024-Update
HORVU3Hr1G096510.5 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
MA_10432580g0010 No alias (at5g62000 : 779.0) Encodes an auxin response factor.... 0.04 Orthogroups_2024-Update
Mp4g11820.1 No alias transcription factor (ARF) 0.02 Orthogroups_2024-Update
PSME_00022730-RA No alias (at5g62000 : 783.0) Encodes an auxin response factor.... 0.03 Orthogroups_2024-Update
Potri.001G358500 No alias auxin response factor 8 0.03 Orthogroups_2024-Update
Potri.003G001000 No alias auxin response factor 1 0.03 Orthogroups_2024-Update
Potri.004G228800 No alias auxin response factor 1 0.03 Orthogroups_2024-Update
Pp1s163_119V6 No alias auxin response 0.03 Orthogroups_2024-Update
Pp1s86_1V6 No alias auxin response 0.03 Orthogroups_2024-Update
Seita.3G020000.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Seita.4G240600.1 No alias ARF-type transcription factor & auxin signal mediator... 0.03 Orthogroups_2024-Update
evm.model.tig00020904.93 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
BP GO:0009725 response to hormone IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
MF GO:0070402 NADPH binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 158 259
IPR033389 AUX/IAA_dom 785 879
IPR010525 Auxin_resp 284 367
No external refs found!