GRMZM2G070562

Description : SRP72 RNA-binding domain

Gene families : OG_42_0005285 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005285_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G070562
Cluster	HCCA clusters: Cluster_213

Target	Alias	Description	ECC score	Gene Family Method	Actions
HORVU3Hr1G090360.3	No alias	component *(SRP72) of SRP (signal recognition particle) complex	0.02	Orthogroups_2024-Update
PSME_00034630-RA	No alias	(at1g67680 : 464.0) SRP72 RNA-binding domain; FUNCTIONS...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	InterProScan predictions
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	InterProScan predictions
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	IEA	InterProScan predictions
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004665	prephenate dehydrogenase (NADP+) activity	IEP	Predicted GO
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
BP	GO:0006570	tyrosine metabolic process	IEP	Predicted GO
BP	GO:0006571	tyrosine biosynthetic process	IEP	Predicted GO
MF	GO:0008977	prephenate dehydrogenase (NAD+) activity	IEP	Predicted GO
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Predicted GO
BP	GO:0016571	histone methylation	IEP	Predicted GO
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predicted GO
BP	GO:0034968	histone lysine methylation	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013699	Signal_recog_part_SRP72_RNA-bd	554	599

External Links

No external refs found!

GRMZM2G070562

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation