GRMZM2G071959

Description : Histone superfamily protein

Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G071959
Cluster	HCCA clusters: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g23230	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g264900	No alias	Histone superfamily protein	0.01	Orthogroups_2024-Update
Cre06.g273850	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre12.g504550	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g504700	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g506200	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre13.g570050	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g708600	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Glyma.13G321600	No alias	Histone superfamily protein	0.04	Orthogroups_2024-Update
HORVU1Hr1G058440.4	No alias	histone *(H2B)	0.05	Orthogroups_2024-Update
HORVU1Hr1G078480.6	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
HORVU3Hr1G013680.1	No alias	histone *(H2B)	0.03	Orthogroups_2024-Update
HORVU3Hr1G086610.4	No alias	histone *(H2B)	0.02	Orthogroups_2024-Update
HORVU4Hr1G009040.2	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
HORVU5Hr1G094500.1	No alias	histone *(H2B)	0.02	Orthogroups_2024-Update
HORVU7Hr1G110310.1	No alias	histone *(H2B)	0.02	Orthogroups_2024-Update
MA_17795g0010	No alias	(o22582\|h2b_goshi : 174.0) Histone H2B - Gossypium...	0.03	Orthogroups_2024-Update
PSME_00000376-RA	No alias	(p54347\|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -...	0.03	Orthogroups_2024-Update
Pp1s56_226V6	No alias	histone h2b	0.02	Orthogroups_2024-Update
Sobic.002G210200.1	No alias	histone *(H2B)	0.02	Orthogroups_2024-Update
Sobic.003G200501.1	No alias	histone *(H2B)	0.03	Orthogroups_2024-Update
Solyc02g038690	No alias	Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC)	0.02	Orthogroups_2024-Update
Solyc03g071620	No alias	Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC)	0.02	Orthogroups_2024-Update
Solyc05g055440	No alias	Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC)	0.02	Orthogroups_2024-Update
Solyc06g005390	No alias	Histone H2B (AHRD V3.3 *** K4C323_SOLLC)	0.03	Orthogroups_2024-Update
Solyc06g074780	No alias	Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC)	0.03	Orthogroups_2024-Update
Solyc06g074790	No alias	Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU)	0.02	Orthogroups_2024-Update
Solyc06g075800	No alias	Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC)	0.02	Orthogroups_2024-Update
Solyc11g007920	No alias	Histone H2B (AHRD V3.3 *** K4D553_SOLLC)	0.02	Orthogroups_2024-Update
Solyc11g007930	No alias	Histone H2B (AHRD V3.3 *** K4D554_SOLLC)	0.02	Orthogroups_2024-Update
Solyc11g066430	No alias	histone H2B	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006325	chromatin organization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0016043	cellular component organization	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predicted GO
BP	GO:0022607	cellular component assembly	IEP	Predicted GO
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Predicted GO
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043647	inositol phosphate metabolic process	IEP	Predicted GO
BP	GO:0043933	protein-containing complex subunit organization	IEP	Predicted GO
BP	GO:0046165	alcohol biosynthetic process	IEP	Predicted GO
BP	GO:0046173	polyol biosynthetic process	IEP	Predicted GO
BP	GO:0065003	protein-containing complex assembly	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	4	127

External Links

No external refs found!

GRMZM2G071959

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation