GRMZM2G071970

Description : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family

Gene families : OG_42_0000486 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000486_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G071970
Cluster	HCCA clusters: Cluster_188

Target	Alias	Description	ECC score	Gene Family Method
GRMZM5G826714	No alias	COBRA-like extracellular glycosyl-phosphatidyl...	0.03	Orthogroups_2024-Update
HORVU2Hr1G033080.1	No alias	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	Orthogroups_2024-Update
HORVU5Hr1G095910.1	No alias	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	Orthogroups_2024-Update
LOC_Os05g32110	No alias	COBRA, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g41320	No alias	COBRA-like protein precursor, putative, expressed	0.03	Orthogroups_2024-Update
MA_637485g0010	No alias	(at3g02210 : 634.0) COBRA-like protein 1 precursor...	0.03	Orthogroups_2024-Update
Sobic.001G086200.1	No alias	regulatory protein *(COB) of cellulose-hemicellulose...	0.02	Orthogroups_2024-Update
Solyc03g070440	No alias	COBRA-like protein (AHRD V3.3 *** L0ATP1_POPTO)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010215	cellulose microfibril organization	IEA	InterProScan predictions
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	IEA	InterProScan predictions
BP	GO:0030198	extracellular matrix organization	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	IEA	InterProScan predictions
BP	GO:0040007	growth	None	Extended
BP	GO:0043062	extracellular structure organization	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0003729	mRNA binding	IEP	Predicted GO
CC	GO:0005685	U1 snRNP	IEP	Predicted GO
BP	GO:0006376	mRNA splice site selection	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predicted GO
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predicted GO
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predicted GO
CC	GO:0120114	Sm-like protein family complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006918	COBRA_pln	54	217

External Links

No external refs found!