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  5. GRMZM2G075027

GRMZM2G075027


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG_42_0001960 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G075027
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
At1g16280 No alias DEAD-box ATP-dependent RNA helicase 36... 0.03 Orthogroups_2024-Update
At5g60990 No alias DEAD-box ATP-dependent RNA helicase 10... 0.03 Orthogroups_2024-Update
Bradi1g18930 No alias DEA(D/H)-box RNA helicase family protein 0.05 Orthogroups_2024-Update
Bradi1g20340 No alias RNA helicase 36 0.02 Orthogroups_2024-Update
Brara.C04220.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Cre12.g505200 No alias DEA(D/H)-box RNA helicase family protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G022490.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00043843-RA No alias (at1g16280 : 390.0) RNA helicase 36 (RH36); FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.007G068800 No alias DEA(D/H)-box RNA helicase family protein 0.04 Orthogroups_2024-Update
Sobic.002G387500.1 No alias SSU processome assembly factor *(SWA3) 0.04 Orthogroups_2024-Update
Solyc10g007550 No alias RNA helicase DEAD31 0.03 Orthogroups_2024-Update
evm.model.tig00020848.20 No alias (at5g60990 : 445.0) DEA(D/H)-box RNA helicase family... 0.03 Orthogroups_2024-Update
evm.model.tig00021122.18 No alias (at1g16280 : 275.0) RNA helicase 36 (RH36); FUNCTIONS... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 254 361
IPR011545 DEAD/DEAH_box_helicase_dom 48 218
No external refs found!