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  5. Solyc03g025730

Solyc03g025730


Description : Tubulin beta chain (AHRD V3.3 *** G7IAN2_MEDTR)


Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc03g025730
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
164404 No alias tubulin beta chain 2 0.02 Orthogroups_2024-Update
170592 No alias tubulin beta 8 0.02 Orthogroups_2024-Update
183654 No alias beta-6 tubulin 0.02 Orthogroups_2024-Update
186992 No alias tubulin beta 8 0.02 Orthogroups_2024-Update
402668 No alias tubulin beta 8 0.02 Orthogroups_2024-Update
408201 No alias tubulin beta 8 0.02 Orthogroups_2024-Update
A4A49_15205 No alias tubulin beta-2 chain 0.03 Orthogroups_2024-Update
At5g12250 No alias Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2] 0.02 Orthogroups_2024-Update
Bradi1g78210 No alias tubulin beta 8 0.03 Orthogroups_2024-Update
Brara.E00951.1 No alias beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer 0.05 Orthogroups_2024-Update
Brara.G02205.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_87491g0010 No alias (p93176|tbb_horvu : 807.0) Tubulin beta chain (Beta... 0.03 Orthogroups_2024-Update
Mp1g20730.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.03 Orthogroups_2024-Update
Mp2g09390.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Mp2g16780.1 No alias component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.02 Orthogroups_2024-Update
Potri.003G125400 No alias tubulin beta 8 0.04 Orthogroups_2024-Update
Potri.003G126800 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Potri.012G047600 No alias beta-6 tubulin 0.03 Orthogroups_2024-Update
Pp1s218_7V6 No alias tubulin beta 0.03 Orthogroups_2024-Update
Pp1s252_101V6 No alias tubulin beta 0.02 Orthogroups_2024-Update
Pp1s252_90V6 No alias tubulin beta 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 381
IPR003008 Tubulin_FtsZ_GTPase 3 211
No external refs found!