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  5. GRMZM2G076399

GRMZM2G076399


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG_42_0003055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003055_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G076399
Cluster HCCA clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Glyma.10G186300 No alias Small nuclear ribonucleoprotein family protein 0.06 Orthogroups_2024-Update
Glyma.20G204200 No alias Small nuclear ribonucleoprotein family protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G086790.2 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.07 Orthogroups_2024-Update
MA_11794g0010 No alias (at3g62840 : 192.0) Small nuclear ribonucleoprotein... 0.04 Orthogroups_2024-Update
PSME_00013696-RA No alias (at3g62840 : 192.0) Small nuclear ribonucleoprotein... 0.07 Orthogroups_2024-Update
Potri.014G129100 No alias Small nuclear ribonucleoprotein family protein 0.03 Orthogroups_2024-Update
Pp1s46_237V6 No alias small nuclear ribonucleoprotein d2 0.01 Orthogroups_2024-Update
Seita.3G065200.1 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.05 Orthogroups_2024-Update
Sobic.009G012700.1 No alias component *(Sm-D2) of U1/U2/U4/U5-associated Sm... 0.03 Orthogroups_2024-Update
Solyc09g075130 No alias Small nuclear ribonucleoprotein family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen09g029950 No alias LSM domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003856 3-dehydroquinate synthase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006743 ubiquinone metabolic process IEP Predicted GO
BP GO:0006744 ubiquinone biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042181 ketone biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901661 quinone metabolic process IEP Predicted GO
BP GO:1901663 quinone biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 25 74
No external refs found!