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  5. At1g23410

At1g23410


Description : Ubiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g23410
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
Brara.C01815.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.C02349.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.E00858.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.I03566.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
GRMZM2G047732 No alias Ribosomal protein S27a / Ubiquitin family protein 0.04 Orthogroups_2024-Update
Glyma.19G195500 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.03 Orthogroups_2024-Update
Kfl00345_0130 kfl00345_0130_v1.... (at3g52590 : 254.0) Ubiquitin extension protein;... 0.04 Orthogroups_2024-Update
Mp2g17420.1 No alias ubiquitin-fold protein (UBQ) 0.02 Orthogroups_2024-Update
Potri.015G007100 No alias ubiquitin extension protein 1 0.03 Orthogroups_2024-Update
Pp1s184_64V6 No alias ubiquitin extension protein 0.03 Orthogroups_2024-Update
Seita.7G270700.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Seita.9G478400.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.001G444800.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Sobic.003G152600.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Sobic.009G054800.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Solyc01g056940 No alias Ubiquitin 0.05 Orthogroups_2024-Update
Solyc01g096290 No alias ubiquitin-ribosomal fusion protein 0.05 Orthogroups_2024-Update
Solyc08g008590 No alias ubiquitin-ribosomal fusion protein 0.03 Orthogroups_2024-Update
Solyc12g099030 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.05 Orthogroups_2024-Update
Sopen01g029970 No alias Ubiquitin family 0.05 Orthogroups_2024-Update
Sopen01g040060 No alias Ubiquitin family 0.03 Orthogroups_2024-Update
Sopen03g022330 No alias Ubiquitin family 0.02 Orthogroups_2024-Update
Sopen08g031340 No alias Ubiquitin family 0.05 Orthogroups_2024-Update
Sopen12g033690 No alias Ubiquitin family 0.02 Orthogroups_2024-Update
evm.model.contig_2055.11 No alias (at3g52590 : 241.0) Ubiquitin extension protein;... 0.03 Orthogroups_2024-Update
evm.model.contig_3445.1 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
evm.model.tig00001336.12 No alias (at3g62250 : 155.0) ubiquitin 5 (UBQ5); FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
evm.model.tig00022075.50 No alias (at3g52590 : 236.0) Ubiquitin extension protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002906 Ribosomal_S27a 102 147
IPR000626 Ubiquitin_dom 3 74
No external refs found!