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GRMZM2G084739


Description : Ribosomal protein L6 family


Gene families : OG_42_0002219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G084739
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
Brara.B02733.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.I02694.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Cre12.g494050 No alias Ribosomal protein L6 family 0.01 Orthogroups_2024-Update
Pp1s327_43V6 No alias 60s ribosomal protein l9 0.04 Orthogroups_2024-Update
Pp1s58_149V6 No alias 60s ribosomal protein l9 0.02 Orthogroups_2024-Update
Pp1s79_157V6 No alias 60s ribosomal protein l9 0.03 Orthogroups_2024-Update
Seita.1G003100.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.010G005300.1 No alias component *(uL6) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sopen06g029670 No alias Ribosomal protein L6 0.03 Orthogroups_2024-Update
evm.model.contig_564.5 No alias (at4g10450 : 215.0) Ribosomal protein L6 family;... 0.03 Orthogroups_2024-Update
evm.model.tig00001532.12 No alias (p49210|rl9_orysa : 196.0) 60S ribosomal protein L9 -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
BP GO:0006788 heme oxidation IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0042168 heme metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 12 86
IPR020040 Ribosomal_L6_a/b-dom 98 177
No external refs found!