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  5. GRMZM2G086788

GRMZM2G086788


Description : Ribosomal protein L6 family


Gene families : OG_42_0002024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G086788
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
A4A49_09051 No alias 50s ribosomal protein l6, chloroplastic 0.04 Orthogroups_2024-Update
Bradi1g62170 No alias Ribosomal protein L6 family 0.05 Orthogroups_2024-Update
Cre09.g415950 No alias Ribosomal protein L6 family 0.06 Orthogroups_2024-Update
Glyma.10G197100 No alias ribosomal protein L6 family protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G040950.3 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Kfl00137_0220 kfl00137_0220_v1.1 (at1g05190 : 221.0) embryo defective 2394 (emb2394);... 0.06 Orthogroups_2024-Update
Potri.014G153000 No alias Ribosomal protein L6 family 0.04 Orthogroups_2024-Update
Pp1s138_83V6 No alias 50s ribosomal protein l6 0.06 Orthogroups_2024-Update
Pp1s431_3V6 No alias 50s ribosomal protein l6 0.04 Orthogroups_2024-Update
Seita.9G400600.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Sobic.001G368500.1 No alias component *(uL6c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Solyc12g100160 No alias Ribosomal protein L6 family (AHRD V3.3 *** AT1G05190.1) 0.03 Orthogroups_2024-Update
Sopen12g034790 No alias Ribosomal protein L6 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0019843 rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 56 128
IPR020040 Ribosomal_L6_a/b-dom 136 210
No external refs found!