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  5. GRMZM2G088983

GRMZM2G088983


Description : light harvesting complex photosystem II subunit 6


Gene families : OG_42_0005004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G088983
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
271833 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
A4A49_19796 No alias chlorophyll a-b binding protein cp24 10a, chloroplastic 0.04 Orthogroups_2024-Update
At1g15820 No alias Chlorophyll a-b binding protein, chloroplastic... 0.05 Orthogroups_2024-Update
Bradi5g12150 No alias light harvesting complex photosystem II subunit 6 0.07 Orthogroups_2024-Update
Brara.F01095.1 No alias component *(LHCb6) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.H02525.1 No alias component *(LHCb6) of LHC-II complex 0.04 Orthogroups_2024-Update
Brara.I04910.1 No alias component *(LHCb6) of LHC-II complex 0.03 Orthogroups_2024-Update
Glyma.08G074000 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
Glyma.08G180000 No alias light harvesting complex photosystem II subunit 6 0.03 Orthogroups_2024-Update
Glyma.15G052400 No alias light harvesting complex photosystem II subunit 6 0.04 Orthogroups_2024-Update
HORVU2Hr1G079920.4 No alias component *(LHCb6) of LHC-II complex 0.04 Orthogroups_2024-Update
LOC_Os04g38410 No alias chlorophyll A-B binding protein, putative, expressed 0.03 Orthogroups_2024-Update
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.03 Orthogroups_2024-Update
Pp1s28_315V6 No alias chloroplast light-harvesting complex ii protein 0.04 Orthogroups_2024-Update
Pp1s28_319V6 No alias chloroplast light-harvesting complex ii protein 0.04 Orthogroups_2024-Update
Seita.7G121800.1 No alias component *(LHCb6) of LHC-II complex 0.07 Orthogroups_2024-Update
Sobic.006G264201.1 No alias component *(LHCb6) of LHC-II complex 0.06 Orthogroups_2024-Update
Solyc01g105030 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.08 Orthogroups_2024-Update
Solyc01g105050 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.07 Orthogroups_2024-Update
Sopen01g047580 No alias Chlorophyll A-B binding protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 36 85
No external refs found!