GRMZM2G092719

Description : 40s ribosomal protein SA B

Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G092719
Cluster	HCCA clusters: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
36118	No alias	40s ribosomal protein SA	0.05	Orthogroups_2024-Update
Bradi1g20880	No alias	40s ribosomal protein SA B	0.07	Orthogroups_2024-Update
Bradi1g23780	No alias	40s ribosomal protein SA B	0.07	Orthogroups_2024-Update
Bradi1g60310	No alias	40s ribosomal protein SA B	0.07	Orthogroups_2024-Update
Bradi1g72480	No alias	40s ribosomal protein SA B	0.06	Orthogroups_2024-Update
Brara.B02024.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.D01465.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.G02358.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.G03124.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
GRMZM2G145308	No alias	40s ribosomal protein SA B	0.02	Orthogroups_2024-Update
Glyma.07G043800	No alias	40s ribosomal protein SA B	0.08	Orthogroups_2024-Update
Glyma.08G159800	No alias	40s ribosomal protein SA B	0.07	Orthogroups_2024-Update
Glyma.15G267100	No alias	40s ribosomal protein SA B	0.08	Orthogroups_2024-Update
Glyma.16G012200	No alias	40s ribosomal protein SA B	0.07	Orthogroups_2024-Update
HORVU2Hr1G030880.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
HORVU4Hr1G077240.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Mp2g26290.1	No alias	component RPSa of SSU proteome	0.02	Orthogroups_2024-Update
Potri.003G071200	No alias	40s ribosomal protein SA B	0.08	Orthogroups_2024-Update
Potri.012G117600	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
Potri.015G112900	No alias	40s ribosomal protein SA	0.05	Orthogroups_2024-Update
Pp1s48_103V6	No alias	40s ribosomal protein sa	0.05	Orthogroups_2024-Update
Seita.2G389700.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Seita.9G371600.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Seita.9G517100.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Sobic.002G374900.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Sobic.002G375100.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Sobic.005G229300.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Solyc03g019780	No alias	40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC)	0.05	Orthogroups_2024-Update
Solyc06g072120	No alias	40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC)	0.06	Orthogroups_2024-Update
Sopen03g029850	No alias	Ribosomal protein S2	0.09	Orthogroups_2024-Update
Sopen06g028410	No alias	Ribosomal protein S2	0.06	Orthogroups_2024-Update
evm.model.contig_4456.25	No alias	(o22518\|rssa_soybn : 282.0) 40S ribosomal protein SA...	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_S2	192	257
IPR001865	Ribosomal_S2	93	187

External Links

No external refs found!

GRMZM2G092719

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation