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GRMZM2G093119


Description : sister chromatid cohesion 1 protein 4


Gene families : OG_42_0001499 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001499_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G093119
Cluster HCCA clusters: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
PSME_00000633-RA No alias (at3g59550 : 186.0) Encodes an alpha-kleisin protein... 0.03 Orthogroups_2024-Update
evm.model.contig_4472.2 No alias (at5g16270 : 110.0) Encodes a SCC1/REC8 ortholog that... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
InterPro domains Description Start Stop
IPR006909 Rad21/Rec8_C_eu 1128 1177
IPR006910 Rad21_Rec8_N 1 102
No external refs found!