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Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM2G096602 | |
| Cluster | HCCA clusters: Cluster_148 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 110016 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| 83339 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
| AC214534.3_FG010 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At1g14470 | No alias | Pentatricopeptide repeat-containing protein At1g14470... | 0.03 | Orthogroups_2024-Update | |
| At2g41080 | No alias | Pentatricopeptide repeat-containing protein At2g41080... | 0.04 | Orthogroups_2024-Update | |
| At4g30700 | No alias | MEF29 [Source:UniProtKB/TrEMBL;Acc:A0A178UUW3] | 0.03 | Orthogroups_2024-Update | |
| At5g06540 | No alias | Pentatricopeptide repeat-containing protein At5g06540... | 0.03 | Orthogroups_2024-Update | |
| Bradi3g29450 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G227300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.05G026400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G196400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.08G208902 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.09G236700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G286100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G074100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G183600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU0Hr1G015630.5 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU0Hr1G023470.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G019670.6 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G080630.6 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| HORVU3Hr1G080810.1 | No alias | RNA editing factor *(MEF10) | 0.04 | Orthogroups_2024-Update | |
| HORVU5Hr1G079090.7 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| HORVU6Hr1G063760.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| LOC_Os05g30710 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os08g42610 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os09g38310 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os11g45410 | No alias | expressed protein | 0.03 | Orthogroups_2024-Update | |
| MA_205762g0010 | No alias | (at4g02750 : 416.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| MA_79624g0010 | No alias | (at3g25970 : 531.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| Pp1s26_188V6 | No alias | No description available | 0.02 | Orthogroups_2024-Update | |
| Pp1s68_207V6 | No alias | ppr gene for putative pentatricopeptide repeat-like protein PPR | 0.03 | Orthogroups_2024-Update | |
| Seita.4G168200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.5G124400.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
| Seita.5G381200.1 | No alias | RNA editing factor *(CRR2) | 0.02 | Orthogroups_2024-Update | |
| Seita.7G277600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.9G057100.1 | No alias | RNA editing factor *(OTP85) | 0.02 | Orthogroups_2024-Update | |
| Sobic.006G275900.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sopen10g004380 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| CC | GO:0031225 | anchored component of membrane | IEP | Predicted GO |
| CC | GO:0031226 | intrinsic component of plasma membrane | IEP | Predicted GO |
| CC | GO:0044459 | plasma membrane part | IEP | Predicted GO |
| CC | GO:0046658 | anchored component of plasma membrane | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 600 | 724 |
| IPR002885 | Pentatricopeptide_repeat | 222 | 265 |
| IPR002885 | Pentatricopeptide_repeat | 426 | 474 |
| IPR002885 | Pentatricopeptide_repeat | 329 | 358 |
| IPR002885 | Pentatricopeptide_repeat | 91 | 117 |
| IPR002885 | Pentatricopeptide_repeat | 501 | 524 |
| IPR002885 | Pentatricopeptide_repeat | 162 | 189 |
| IPR002885 | Pentatricopeptide_repeat | 194 | 217 |
| IPR002885 | Pentatricopeptide_repeat | 298 | 318 |
| No external refs found! |