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  5. GRMZM2G096705

GRMZM2G096705


Description : La protein 1


Gene families : OG_42_0002790 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G096705
Cluster HCCA clusters: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
A4A49_17307 No alias la protein 1 0.03 Orthogroups_2024-Update
Bradi5g14590 No alias La protein 1 0.03 Orthogroups_2024-Update
Brara.A00518.1 No alias nascent RNA chaperone *(LA) 0.03 Orthogroups_2024-Update
Cre17.g724200 No alias RNA recognition motif (RRM)-containing protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G085880.1 No alias nascent RNA chaperone *(LA) 0.03 Orthogroups_2024-Update
PSME_00020810-RA No alias (at1g28520 : 122.0) vascular plant one zinc finger... 0.02 Orthogroups_2024-Update
Potri.006G241800 No alias La protein 1 0.02 Orthogroups_2024-Update
Seita.1G228700.1 No alias nascent RNA chaperone *(LA) 0.03 Orthogroups_2024-Update
Seita.7G153300.1 No alias nascent RNA chaperone *(LA) 0.02 Orthogroups_2024-Update
Sobic.006G135000.1 No alias nascent RNA chaperone *(LA) 0.04 Orthogroups_2024-Update
Solyc08g068310 No alias La-like protein (AHRD V3.3 *** W9RMR2_9ROSA) 0.04 Orthogroups_2024-Update
Sopen08g022160 No alias RNA binding motif 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 129 178
IPR006630 La_HTH 19 65
IPR014886 La_RRM 322 415
No external refs found!