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  5. GRMZM2G099355

GRMZM2G099355


Description : Pre-mRNA-processing-splicing factor


Gene families : OG_42_0004183 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G099355
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Bradi1g48264 No alias Pre-mRNA-processing-splicing factor 0.03 Orthogroups_2024-Update
Cre01.g016050 No alias Pre-mRNA-processing-splicing factor 0.02 Orthogroups_2024-Update
Glyma.15G007100 No alias Pre-mRNA-processing-splicing factor 0.03 Orthogroups_2024-Update
Kfl00461_0140 kfl00461_0140_v1.1 (at1g80070 : 4182.0) a genetic locus involved in... 0.01 Orthogroups_2024-Update
Mp1g12380.1 No alias protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 Orthogroups_2024-Update
Seita.4G060000.1 No alias protein factor *(PRPF8/SUS2) of MAC... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0017070 U6 snRNA binding IEA InterProScan predictions
MF GO:0030623 U5 snRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0008593 regulation of Notch signaling pathway IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0009967 positive regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0010647 positive regulation of cell communication IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0023056 positive regulation of signaling IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0045747 positive regulation of Notch signaling pathway IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0048584 positive regulation of response to stimulus IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
CC GO:1902554 serine/threonine protein kinase complex IEP Predicted GO
CC GO:1902911 protein kinase complex IEP Predicted GO
CC GO:1990316 Atg1/ULK1 kinase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR021983 PRP8_domainIV 1788 2017
IPR019580 Prp8_U6-snRNA-bd 1470 1628
IPR019582 RRM_spliceosomal_PrP8 1013 1103
IPR000555 JAMM/MPN+_dom 2130 2227
IPR019581 Prp8_U5-snRNA-bd 1238 1371
IPR012984 PROCT 2240 2360
IPR012591 PRO8NT 83 234
IPR012592 PROCN 423 828
No external refs found!