GRMZM2G104958

Description : RGPR-related

Gene families : OG_42_0001122 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001122_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G104958
Cluster	HCCA clusters: Cluster_213

Target	Alias	Description	ECC score	Gene Family Method
HORVU6Hr1G003500.1	No alias	Sar1-GTPase-regulating protein *(Sec16)	0.04	Orthogroups_2024-Update
Seita.1G004100.1	No alias	Sar1-GTPase-regulating protein *(Sec16)	0.04	Orthogroups_2024-Update
Seita.4G004500.1	No alias	Sar1-GTPase-regulating protein *(Sec16)	0.03	Orthogroups_2024-Update
Sobic.004G004300.1	No alias	Sar1-GTPase-regulating protein *(Sec16)	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predicted GO
MF	GO:0003682	chromatin binding	IEP	Predicted GO
CC	GO:0005665	RNA polymerase II, core complex	IEP	Predicted GO
BP	GO:0006338	chromatin remodeling	IEP	Predicted GO
BP	GO:0006366	transcription by RNA polymerase II	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0016071	mRNA metabolic process	IEP	Predicted GO
CC	GO:0030880	RNA polymerase complex	IEP	Predicted GO
MF	GO:0031491	nucleosome binding	IEP	Predicted GO
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Predicted GO
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR024340	Sec16_CCD	181	305
IPR024298	ACE1_Sec16_Sec31	366	647

External Links

No external refs found!