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  5. GRMZM2G106308

GRMZM2G106308


Description : binding


Gene families : OG_42_0000994 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G106308
Cluster HCCA clusters: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Bradi5g14790 No alias binding 0.02 Orthogroups_2024-Update
Brara.H02520.1 No alias cohesin cofactor *(PDS5) 0.03 Orthogroups_2024-Update
Glyma.04G061700 No alias Function unknown 0.03 Orthogroups_2024-Update
Glyma.04G061800 No alias Function unknown 0.04 Orthogroups_2024-Update
Glyma.06G062600 No alias Function unknown 0.02 Orthogroups_2024-Update
HORVU2Hr1G086710.1 No alias cohesin cofactor *(PDS5) 0.03 Orthogroups_2024-Update
LOC_Os02g39920 No alias AT hook motif family protein, expressed 0.02 Orthogroups_2024-Update
PSME_00006462-RA No alias (at4g31880 : 248.0) LOCATED IN: cytosol; EXPRESSED IN:... 0.03 Orthogroups_2024-Update
Seita.1G230900.1 No alias cohesin cofactor *(PDS5) 0.03 Orthogroups_2024-Update
Sobic.004G213000.1 No alias cohesin cofactor *(PDS5) 0.07 Orthogroups_2024-Update
Sopen06g024230 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!