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At1g27960


Description : At1g27960 [Source:UniProtKB/TrEMBL;Acc:Q500V8]


Gene families : OG_42_0000396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g27960
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Brara.F00450.1 No alias methylation reader *(ECT) 0.04 Orthogroups_2024-Update
Glyma.08G124600 No alias evolutionarily conserved C-terminal region 2 0.03 Orthogroups_2024-Update
PSME_00050439-RA No alias (at3g13060 : 166.0) evolutionarily conserved C-terminal... 0.03 Orthogroups_2024-Update
Potri.001G056100 No alias evolutionarily conserved C-terminal region 5 0.03 Orthogroups_2024-Update
Solyc01g028860 No alias evolutionarily conserved C-terminal region 2 (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR007275 YTH_domain 331 467
No external refs found!