GRMZM2G108643

Description : Ribosomal protein L17 family protein

Gene families : OG_42_0005563 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005563_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea release: GRMZM2G108643
Cluster	HCCA clusters: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
A4A49_36556	No alias	50s ribosomal protein l17, chloroplastic	0.07	Orthogroups_2024-Update
Bradi1g04130	No alias	Ribosomal protein L17 family protein	0.07	Orthogroups_2024-Update
Brara.G01626.1	No alias	component *(bL17c) of large plastid ribosomal-subunit proteome	0.1	Orthogroups_2024-Update
Brara.I03693.1	No alias	component *(bL17c) of large plastid ribosomal-subunit proteome	0.05	Orthogroups_2024-Update
Cre02.g108850	No alias	Ribosomal protein L17 family protein	0.09	Orthogroups_2024-Update
Glyma.11G201700	No alias	Ribosomal protein L17 family protein	0.05	Orthogroups_2024-Update
Glyma.18G049200	No alias	Ribosomal protein L17 family protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G111640.1	No alias	component *(bL17c) of large plastid ribosomal-subunit proteome	0.06	Orthogroups_2024-Update
Kfl00372_0120	kfl00372_0120_v1.1	(at3g54210 : 186.0) Ribosomal protein L17 family...	0.09	Orthogroups_2024-Update
Mp8g05860.1	No alias	component psRPL17 of large ribosomal subunit proteome	0.02	Orthogroups_2024-Update
Potri.016G143100	No alias	Ribosomal protein L17 family protein	0.05	Orthogroups_2024-Update
Pp1s37_63V6	No alias	ribosomal protein l17-like protein	0.03	Orthogroups_2024-Update
Pp1s74_265V6	No alias	ribosomal protein l17-like protein	0.09	Orthogroups_2024-Update
Seita.9G039000.1	No alias	component *(bL17c) of large plastid ribosomal-subunit proteome	0.07	Orthogroups_2024-Update
Sobic.001G040000.2	No alias	component *(bL17c) of large plastid ribosomal-subunit proteome	0.06	Orthogroups_2024-Update
Solyc06g082750	No alias	50S ribosomal protein L17 (AHRD V3.3 *** A0A072UXJ8_MEDTR)	0.02	Orthogroups_2024-Update
Sopen06g034110	No alias	Ribosomal protein L17	0.07	Orthogroups_2024-Update
evm.model.tig00000889.52	No alias	(at3g54210 : 159.0) Ribosomal protein L17 family...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004514	nicotinate-nucleotide diphosphorylase (carboxylating) activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004817	cysteine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005102	signaling receptor binding	IEP	Predicted GO
CC	GO:0005737	cytoplasm	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEP	Predicted GO
MF	GO:0008083	growth factor activity	IEP	Predicted GO
BP	GO:0008283	cell proliferation	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
BP	GO:0009435	NAD biosynthetic process	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predicted GO
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predicted GO
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0019674	NAD metabolic process	IEP	Predicted GO
BP	GO:0019725	cellular homeostasis	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030545	receptor regulator activity	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0042592	homeostatic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0045454	cell redox homeostasis	IEP	Predicted GO
MF	GO:0048018	receptor ligand activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000456	Ribosomal_L17	113	209

External Links

No external refs found!

GRMZM2G108643

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation