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  5. GRMZM2G121074

GRMZM2G121074


Description : ARM repeat superfamily protein


Gene families : OG_42_0006997 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006997_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G121074
Cluster HCCA clusters: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
At1g13160 No alias ARM repeat superfamily protein... 0.03 Orthogroups_2024-Update
Bradi5g22790 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Brara.I05045.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre06.g277050 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
Kfl00311_0100 kfl00311_0100_v1.1 (at1g13160 : 363.0) ARM repeat superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.008G182900 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G248800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.006G226300.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Sopen12g034510 No alias SDA1 0.03 Orthogroups_2024-Update
evm.model.contig_2068.25 No alias (at1g13160 : 220.0) ARM repeat superfamily protein;... 0.03 Orthogroups_2024-Update
evm.model.tig00000545.36 No alias (at1g13160 : 272.0) ARM repeat superfamily protein;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR012977 Uncharacterised_NUC130/133_N 88 139
IPR007949 SDA1_dom 448 830
No external refs found!