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  5. GRMZM2G121612

GRMZM2G121612


Description : starch synthase 3


Gene families : OG_42_0001050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001050_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Zea release: GRMZM2G121612
Cluster HCCA clusters: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
Glyma.13G204700 No alias starch synthase 3 0.03 Orthogroups_2024-Update
Glyma.15G108000 No alias starch synthase 3 0.03 Orthogroups_2024-Update
HORVU1Hr1G080950.5 No alias starch synthase *(SS4) 0.03 Orthogroups_2024-Update
HORVU2Hr1G106410.9 No alias starch synthase *(SS3) 0.05 Orthogroups_2024-Update
LOC_Os04g53310 No alias soluble starch synthase 3, chloroplast precursor,... 0.06 Orthogroups_2024-Update
Mp1g14910.1 No alias starch synthase (SSIV) 0.02 Orthogroups_2024-Update
Mp1g23570.1 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.03 Orthogroups_2024-Update
Mp2g20000.1 No alias starch synthase (SSIII) 0.02 Orthogroups_2024-Update
Seita.7G243900.1 No alias starch synthase *(SS3) 0.07 Orthogroups_2024-Update
Sobic.006G221000.1 No alias starch synthase *(SS3) 0.04 Orthogroups_2024-Update
Solyc02g080570 No alias Soluble starch synthase 3, chloroplastic/amyloplastic... 0.03 Orthogroups_2024-Update
Sopen02g025270 No alias Carbohydrate binding domain (family 25) 0.03 Orthogroups_2024-Update
evm.model.tig00020746.8 No alias (at4g18240 : 154.0) starch synthase 4 (SS4); FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predicted GO
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 992 1112
IPR005085 CBM25 486 572
IPR005085 CBM25 648 733
IPR005085 CBM25 312 391
IPR013534 Starch_synth_cat_dom 744 931
No external refs found!