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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea release: GRMZM2G123014 | |
| Cluster | HCCA clusters: Cluster_87 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g03510 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
| At3g57430 | No alias | Pentatricopeptide repeat-containing protein At3g57430,... | 0.02 | Orthogroups_2024-Update | |
| Bradi1g00491 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi1g05610 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Bradi4g28137 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.C00179.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.C04029.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.D01648.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.J01291.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Glyma.09G168800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.16G049800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G056450.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| LOC_Os03g04390 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os05g12130 | No alias | EMB2261, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_10164206g0010 | No alias | (at1g11290 : 670.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
| MA_135075g0020 | No alias | (at3g57430 : 714.0) Encodes a chloroplast RNA editing... | 0.02 | Orthogroups_2024-Update | |
| Potri.001G217600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.006G245300 | No alias | Function unknown | 0.02 | Orthogroups_2024-Update | |
| Potri.013G089400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.017G083900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.017G091600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.1G191400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.5G361000.1 | No alias | RNA editing factor *(MEF10) | 0.03 | Orthogroups_2024-Update | |
| Seita.7G293800.1 | No alias | RNA editing factor *(REME2/PGL1) | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G069300.2 | No alias | RNA editing factor *(DEK36) | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G509700.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.002G240900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G199400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.007G208400.1 | No alias | RNA editing factor *(REME1) | 0.02 | Orthogroups_2024-Update | |
| Solyc05g006800 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc06g066080 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| MF | GO:0008987 | quinolinate synthetase A activity | IEP | Predicted GO |
| BP | GO:0009435 | NAD biosynthetic process | IEP | Predicted GO |
| BP | GO:0019674 | NAD metabolic process | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 579 | 626 |
| IPR002885 | Pentatricopeptide_repeat | 473 | 523 |
| IPR002885 | Pentatricopeptide_repeat | 323 | 367 |
| IPR002885 | Pentatricopeptide_repeat | 289 | 321 |
| IPR032867 | DYW_dom | 752 | 876 |
| IPR002885 | Pentatricopeptide_repeat | 186 | 215 |
| IPR002885 | Pentatricopeptide_repeat | 654 | 678 |
| IPR002885 | Pentatricopeptide_repeat | 219 | 244 |
| IPR002885 | Pentatricopeptide_repeat | 444 | 470 |
| No external refs found! |