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  5. GRMZM2G125148

GRMZM2G125148


Description : NOP56-like pre RNA processing ribonucleoprotein


Gene families : OG_42_0003373 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003373_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G125148
Cluster HCCA clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
146841 No alias NOP56-like pre RNA processing ribonucleoprotein 0.02 Orthogroups_2024-Update
A4A49_01090 No alias putative nucleolar protein 5-2 0.03 Orthogroups_2024-Update
Bradi1g18440 No alias NOP56-like pre RNA processing ribonucleoprotein 0.04 Orthogroups_2024-Update
Bradi1g62430 No alias NOP56-like pre RNA processing ribonucleoprotein 0.1 Orthogroups_2024-Update
Brara.F02881.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.07 Orthogroups_2024-Update
Brara.I00439.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.06 Orthogroups_2024-Update
Cre10.g441400 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
Glyma.12G040200 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
HORVU2Hr1G020690.6 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.07 Orthogroups_2024-Update
Kfl00291_0060 kfl00291_0060_v1.... (at3g05060 : 613.0) SAR DNA-binding protein, putative,... 0.02 Orthogroups_2024-Update
LOC_Os03g22730 No alias nucleolar protein NOP5-1, putative, expressed 0.03 Orthogroups_2024-Update
Potri.005G045600 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
Pp1s11_243V6 No alias nucleolar protein expressed 0.04 Orthogroups_2024-Update
Pp1s22_229V6 No alias nucleolar protein expressed 0.03 Orthogroups_2024-Update
Seita.9G404600.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.08 Orthogroups_2024-Update
Seita.9G404700.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.04 Orthogroups_2024-Update
Sobic.001G372800.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.06 Orthogroups_2024-Update
Sobic.003G407800.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.03 Orthogroups_2024-Update
Solyc09g083080 No alias MAR-binding protein 0.05 Orthogroups_2024-Update
Sopen09g031960 No alias Putative snoRNA binding domain 0.04 Orthogroups_2024-Update
evm.model.contig_496.10 No alias (at5g27120 : 425.0) SAR DNA-binding protein, putative,... 0.02 Orthogroups_2024-Update
evm.model.tig00021350.31 No alias (at3g05060 : 530.0) SAR DNA-binding protein, putative,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018298 protein-chromophore linkage IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR002687 Nop_dom 166 395
IPR012974 NOP5_N 2 65
No external refs found!