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GRMZM2G125642


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G125642
Cluster HCCA clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G078890.8 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g73410 No alias FYVE zinc finger domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g49430 No alias ZR1 protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00001887-RA No alias (at5g19420 : 1094.0) Regulator of chromosome... 0.05 Orthogroups_2024-Update
Sopen02g025890 No alias Regulator of chromosome condensation (RCC1) repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR027988 BRX_N 784 818
IPR000306 Znf_FYVE 529 595
IPR000408 Reg_chr_condens 478 525
IPR000408 Reg_chr_condens 309 357
IPR000408 Reg_chr_condens 424 473
IPR000408 Reg_chr_condens 253 304
IPR000408 Reg_chr_condens 372 421
IPR013591 Brevis_radix_dom 891 945
No external refs found!